PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g027590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 215aa    MW: 24618.5 Da    PI: 8.8184
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g027590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.27e-06118141123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+Cp+C+ +F ++  +  Hi++ H
  Csa13g027590.1 118 YTCPKCNHVFETSQKFAAHISSiH 141
                     9*******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0078118141IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993118146IPR007087Zinc finger, C2H2
PROSITE patternPS000280120141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTIIPNGLNS YGDDSMNIHS FPPIETSSNF RNYESKKVES MFGTSGYTNH HALYSSLNVS  60
SSSFNFNNSH VAYQMRENIV STFGMPSITQ IPNNPHLSQI SVTQTITNSL PYKKYGPYTC  120
PKCNHVFETS QKFAAHISSI HYKNKTINER FKRYNTRNKK RLCKTNQMIH EECRNIQLEE  180
RVVEQNGGNN NIASDPEAYQ HHIVVKEPTY DIFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424242.11e-63PREDICTED: uncharacterized protein LOC104709301
TrEMBLR0GZ563e-53R0GZ56_9BRAS; Uncharacterized protein
STRINGscaffold_602360.11e-49(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.16e-43C2H2-like zinc finger protein